Default Search Shortcode Causing Admin Panel Issue

This is hard to describe, but when I put a shortcode box on a page, and a Generate Blocks Container block on a page, it causes the admin panel for the container block to have huge spaces around the settings. In the picture it shows Ivory search in a resuable block, but I have also tested it in a standard shortcode box with the same results.

In the picture above you can see the layout container box on the right is messed up, with way too much space around the setting options. This only happens with Ivory search on the page.

I do have this custom CSS code for Ivory, but I have tried removing that CSS and it did not seem to make a difference.

form.is-form-style span.is-search-icon,
form.is-form-style input.is-search-input,
form.is-form-style button.is-search-submit {
    height: 50px; 
}

@media (min-width: 769px)
{
form.is-form-style input.is-search-input {
width: 40%; float: right;
}
}

.on-page-search-box form.is-form-style input.is-search-input {
width: 100%; float: left;
}

I also have a filter that replaces the WP search function box with Ivory on Generate Press.

add_filter( 'generate_navigation_search_output', function() {
    return sprintf(
        '<div class="navigation-search">%s</div>',
        do_shortcode( '[ivory-search id="14078" title="Default Search Form"]' )
    );
} );

Thank you for your help.